Author
DataApex
DataApex
Since 1991 DataApex develops and manufactures chromatography data stations. DataApex is constantly striving to provide users with efficient and up-to-date tools for chromatography data processing.
Tags
Article
Product
Software
Video
LinkedIn Logo

Working with User Variables in Clarity Chromatography Software

Tu, 30.9.2025
| Original article from: DataApex
Step-by-step guide to working with user variables in Clarity. Learn how to set them in methods, analyses, and sequences, and use them in calculations and reports.
Video placeholder
  • Photo: DataApex: How to use User Variables in the custom calculations
  • Video: DataApex: How to use User Variables in the custom calculations

Introduction

User variables in Clarity Chromatography Software allow analysts to add custom parameters to chromatograms, which can then be applied in tailored calculations and reports. This article explains how to define and manage these variables, where they can be accessed, and how to effectively use them within methods, single analyses, and sequences.

Types of User Variables in Clarity

Clarity provides two distinct sets of user variables:

  1. Method User Variables
    • Defined within a chromatographic method.
    • Apply to all chromatograms measured with that method.
  2. Analysis User Variables
    • Defined for a single analysis or sequence.
    • Apply only to specific runs, allowing flexible annotation or parameterization.

Defining Method User Variables

  1. Open the desired method in Clarity.
  2. Navigate to the Advanced tab.
  3. In the Method User Variables section, three fields are available to assign names and values.
  4. Enter the required parameters and save the method.
  5. These values will now automatically appear in all chromatograms measured with this method.

Defining Analysis User Variables

Single Analysis

  1. Open the Single Analysis dialog.
  2. Go to the User Variables section.
  3. Enter names and values as needed.

Sequence

  1. In the Sequence window, the variable columns are hidden by default.
  2. Right-click anywhere in the table and select Setup Columns.
  3. Locate Analysis User Variables 1–3 in the list.
  4. Rename them if necessary and move them to the Shown section.
  5. Confirm with OK. The variable columns will now be visible and editable directly within the sequence table.

Viewing and Editing Variables in a Chromatogram

When a chromatogram is acquired with both method-defined and analysis-defined variables, both sets will be stored together.

Within the chromatogram window you can:

  • View the current variables,
  • Edit them if adjustments are needed,
  • Apply them in user column calculations.

Using User Variables in Calculations

User variables can be directly included in custom calculation columns, offering the following advantages:

  • Adding project-specific metadata to results,
  • Storing supplementary parameters directly within chromatograms,
  • Automating calculations dependent on user-defined values.

This capability significantly enhances reporting flexibility and analytical reproducibility.

Conclusion

User variables in Clarity provide a powerful way to enrich chromatographic data with additional, customizable parameters. By setting them at the method, analysis, or sequence level, analysts can streamline workflows, improve traceability, and adapt calculations to project-specific requirements. Proper use of these variables enables more efficient data management and reporting in chromatography laboratories.

DataApex
LinkedIn Logo
 

Related content

High-Throughput BTEX Analysis in Nail Products by SPME and GC/TQ

Applications
| 2026 | Agilent Technologies
Instrumentation
GC/MSD, GC/MS/MS, GC/QQQ, SPME
Manufacturer
Agilent Technologies
Industries
Materials Testing

Accurate multi-component blast furnace gas analysis maximizes iron production and minimizes coke consumption

Applications
| 2026 | Thermo Fisher Scientific
Instrumentation
GC/MSD
Manufacturer
Thermo Fisher Scientific
Industries
Energy & Chemicals

Gas Chromatograph Nexis GC-2060

Brochures and specifications
| 2026 | Shimadzu
Instrumentation
GC
Manufacturer
Shimadzu
Industries
Other

Quantitative Volatile PFAS Analysis in Textiles

Applications
| 2026 | Agilent Technologies
Instrumentation
GC/MSD, GC/MS/MS, GC/QQQ
Manufacturer
Agilent Technologies
Industries
Materials Testing

Effectiveness of the MonoTrap Collection Method for VOC Analysis in Exhaled Breath Using GC-MS

Applications
| 2026 | Shimadzu
Instrumentation
GC/MSD, Thermal desorption, GC/SQ
Manufacturer
Shimadzu
Industries
Clinical Research
 

Related articles

Clarity chromatograhy software: Tutorial - Sequence window - Overview
Article | Product

Clarity chromatograhy software: Tutorial - Sequence window - Overview

Learn how to use the Sequence Window in Clarity CDS. Step-by-step guide to sample setup, injection control, calibration options, and sequence management.
DataApex
tag
share
more
How to calculate Signal to Noise ratio in Clarity Chromatography Software
Article | Product

How to calculate Signal to Noise ratio in Clarity Chromatography Software

Step-by-step guide to calculating signal-to-noise ratio in Clarity CDS. Learn how to evaluate noise, configure result tables, and assess peak quality.
DataApex
tag
share
more
How to use Special Values in User Columns in Clarity Chromatography Software
Article | Product

How to use Special Values in User Columns in Clarity Chromatography Software

Learn how to use special values in Clarity CDS to create custom user columns, automate chromatographic calculations, and improve data accuracy and efficiency in analytical workflows.
DataApex
tag
share
more
Creating Custom Calculations in Clarity Chromatography Software
Article | Product

Creating Custom Calculations in Clarity Chromatography Software

Step-by-step guide to creating custom user columns in Clarity Chromatography Software. Learn to define, manage, and share calculation expressions for automated analytical results.
DataApex
tag
share
more
 

Related content

High-Throughput BTEX Analysis in Nail Products by SPME and GC/TQ

Applications
| 2026 | Agilent Technologies
Instrumentation
GC/MSD, GC/MS/MS, GC/QQQ, SPME
Manufacturer
Agilent Technologies
Industries
Materials Testing

Accurate multi-component blast furnace gas analysis maximizes iron production and minimizes coke consumption

Applications
| 2026 | Thermo Fisher Scientific
Instrumentation
GC/MSD
Manufacturer
Thermo Fisher Scientific
Industries
Energy & Chemicals

Gas Chromatograph Nexis GC-2060

Brochures and specifications
| 2026 | Shimadzu
Instrumentation
GC
Manufacturer
Shimadzu
Industries
Other

Quantitative Volatile PFAS Analysis in Textiles

Applications
| 2026 | Agilent Technologies
Instrumentation
GC/MSD, GC/MS/MS, GC/QQQ
Manufacturer
Agilent Technologies
Industries
Materials Testing

Effectiveness of the MonoTrap Collection Method for VOC Analysis in Exhaled Breath Using GC-MS

Applications
| 2026 | Shimadzu
Instrumentation
GC/MSD, Thermal desorption, GC/SQ
Manufacturer
Shimadzu
Industries
Clinical Research
 

Related articles

Clarity chromatograhy software: Tutorial - Sequence window - Overview
Article | Product

Clarity chromatograhy software: Tutorial - Sequence window - Overview

Learn how to use the Sequence Window in Clarity CDS. Step-by-step guide to sample setup, injection control, calibration options, and sequence management.
DataApex
tag
share
more
How to calculate Signal to Noise ratio in Clarity Chromatography Software
Article | Product

How to calculate Signal to Noise ratio in Clarity Chromatography Software

Step-by-step guide to calculating signal-to-noise ratio in Clarity CDS. Learn how to evaluate noise, configure result tables, and assess peak quality.
DataApex
tag
share
more
How to use Special Values in User Columns in Clarity Chromatography Software
Article | Product

How to use Special Values in User Columns in Clarity Chromatography Software

Learn how to use special values in Clarity CDS to create custom user columns, automate chromatographic calculations, and improve data accuracy and efficiency in analytical workflows.
DataApex
tag
share
more
Creating Custom Calculations in Clarity Chromatography Software
Article | Product

Creating Custom Calculations in Clarity Chromatography Software

Step-by-step guide to creating custom user columns in Clarity Chromatography Software. Learn to define, manage, and share calculation expressions for automated analytical results.
DataApex
tag
share
more
 

Related content

High-Throughput BTEX Analysis in Nail Products by SPME and GC/TQ

Applications
| 2026 | Agilent Technologies
Instrumentation
GC/MSD, GC/MS/MS, GC/QQQ, SPME
Manufacturer
Agilent Technologies
Industries
Materials Testing

Accurate multi-component blast furnace gas analysis maximizes iron production and minimizes coke consumption

Applications
| 2026 | Thermo Fisher Scientific
Instrumentation
GC/MSD
Manufacturer
Thermo Fisher Scientific
Industries
Energy & Chemicals

Gas Chromatograph Nexis GC-2060

Brochures and specifications
| 2026 | Shimadzu
Instrumentation
GC
Manufacturer
Shimadzu
Industries
Other

Quantitative Volatile PFAS Analysis in Textiles

Applications
| 2026 | Agilent Technologies
Instrumentation
GC/MSD, GC/MS/MS, GC/QQQ
Manufacturer
Agilent Technologies
Industries
Materials Testing

Effectiveness of the MonoTrap Collection Method for VOC Analysis in Exhaled Breath Using GC-MS

Applications
| 2026 | Shimadzu
Instrumentation
GC/MSD, Thermal desorption, GC/SQ
Manufacturer
Shimadzu
Industries
Clinical Research
 

Related articles

Clarity chromatograhy software: Tutorial - Sequence window - Overview
Article | Product

Clarity chromatograhy software: Tutorial - Sequence window - Overview

Learn how to use the Sequence Window in Clarity CDS. Step-by-step guide to sample setup, injection control, calibration options, and sequence management.
DataApex
tag
share
more
How to calculate Signal to Noise ratio in Clarity Chromatography Software
Article | Product

How to calculate Signal to Noise ratio in Clarity Chromatography Software

Step-by-step guide to calculating signal-to-noise ratio in Clarity CDS. Learn how to evaluate noise, configure result tables, and assess peak quality.
DataApex
tag
share
more
How to use Special Values in User Columns in Clarity Chromatography Software
Article | Product

How to use Special Values in User Columns in Clarity Chromatography Software

Learn how to use special values in Clarity CDS to create custom user columns, automate chromatographic calculations, and improve data accuracy and efficiency in analytical workflows.
DataApex
tag
share
more
Creating Custom Calculations in Clarity Chromatography Software
Article | Product

Creating Custom Calculations in Clarity Chromatography Software

Step-by-step guide to creating custom user columns in Clarity Chromatography Software. Learn to define, manage, and share calculation expressions for automated analytical results.
DataApex
tag
share
more
 

Related content

High-Throughput BTEX Analysis in Nail Products by SPME and GC/TQ

Applications
| 2026 | Agilent Technologies
Instrumentation
GC/MSD, GC/MS/MS, GC/QQQ, SPME
Manufacturer
Agilent Technologies
Industries
Materials Testing

Accurate multi-component blast furnace gas analysis maximizes iron production and minimizes coke consumption

Applications
| 2026 | Thermo Fisher Scientific
Instrumentation
GC/MSD
Manufacturer
Thermo Fisher Scientific
Industries
Energy & Chemicals

Gas Chromatograph Nexis GC-2060

Brochures and specifications
| 2026 | Shimadzu
Instrumentation
GC
Manufacturer
Shimadzu
Industries
Other

Quantitative Volatile PFAS Analysis in Textiles

Applications
| 2026 | Agilent Technologies
Instrumentation
GC/MSD, GC/MS/MS, GC/QQQ
Manufacturer
Agilent Technologies
Industries
Materials Testing

Effectiveness of the MonoTrap Collection Method for VOC Analysis in Exhaled Breath Using GC-MS

Applications
| 2026 | Shimadzu
Instrumentation
GC/MSD, Thermal desorption, GC/SQ
Manufacturer
Shimadzu
Industries
Clinical Research
 

Related articles

Clarity chromatograhy software: Tutorial - Sequence window - Overview
Article | Product

Clarity chromatograhy software: Tutorial - Sequence window - Overview

Learn how to use the Sequence Window in Clarity CDS. Step-by-step guide to sample setup, injection control, calibration options, and sequence management.
DataApex
tag
share
more
How to calculate Signal to Noise ratio in Clarity Chromatography Software
Article | Product

How to calculate Signal to Noise ratio in Clarity Chromatography Software

Step-by-step guide to calculating signal-to-noise ratio in Clarity CDS. Learn how to evaluate noise, configure result tables, and assess peak quality.
DataApex
tag
share
more
How to use Special Values in User Columns in Clarity Chromatography Software
Article | Product

How to use Special Values in User Columns in Clarity Chromatography Software

Learn how to use special values in Clarity CDS to create custom user columns, automate chromatographic calculations, and improve data accuracy and efficiency in analytical workflows.
DataApex
tag
share
more
Creating Custom Calculations in Clarity Chromatography Software
Article | Product

Creating Custom Calculations in Clarity Chromatography Software

Step-by-step guide to creating custom user columns in Clarity Chromatography Software. Learn to define, manage, and share calculation expressions for automated analytical results.
DataApex
tag
share
more
Other projects
LCMS
ICPMS
Follow us
FacebookX (Twitter)LinkedInYouTube
More information
WebinarsAbout usContact usTerms of use
LabRulez s.r.o. All rights reserved. Content available under a CC BY-SA 4.0 Attribution-ShareAlike