GCMS
More information
WebinarsAbout usContact usTerms of use
LabRulez s.r.o. All rights reserved. Content available under a CC BY-SA 4.0 Attribution-ShareAlike
Author
Thermo Fisher Scientific
Thermo Fisher Scientific
A unique company dedicated to serving science helping our customers drive productivity and accelerate results. Through our premier brands – Thermo Scientific, Applied Biosystems, Invitrogen, Fisher Scientific and Unity Lab Services.
Tags
Article
Product
Application
Video
LinkedIn Logo

Automating Biodiesel Quality Testing With Gas Chromatography (GC)

Tu, 13.5.2025
| Original article from: Thermo Fisher Scientific / Dr. Daniela Cavagnino
The usage of biofuels has been expanding quickly, as businesses and industries throughout the world invest in the technology to lower their carbon footprint and meet renewable energy targets.
Video placeholder
  • Photo: Thermo Fisher Scientific: Automating Biodiesel Quality Testing With Gas Chromatography (GC)
  • Video: Thermo GCMS: Thermo Scientific - Automated FAMEs Sample Prep with the TriPlus RSH Autosampler

In recent years, the use of biofuels, such as biodiesel, has increased as a clean and renewable alternative to conventional fossil fuels, representing a sustainable way to lower greenhouse gas emissions. Biofuels are created from biomass, such as food crops, plants, and more recently from algae, or waste products. The usage of biofuels has been expanding quickly, as businesses and industries throughout the world invest in the technology to lower their carbon footprint and meet renewable energy targets.

Thermo Fisher Scientific: Automating Biodiesel Quality Testing With Gas Chromatography (GC).Thermo Fisher Scientific: Automating Biodiesel Quality Testing With Gas Chromatography (GC).

Biodiesel production

Widely used fuel-grade biodiesel is made from vegetable oils (e.g., rapeseed, soybean, palm oil) through the chemical process of transesterification with alcohol (typically methanol), whereby glycerin is separated from the resulted mixture of free fatty esters (biodiesel).

Once separated from glycerin, biodiesel can be blended with petroleum diesel in various concentrations, labeled as BXX, where XX represents the percentage of biodiesel in the mineral diesel. Typically, it can be used at a concentration of 5 percent (B5) up to 20 percent (B20) in diesel engines with little or no modifications.

Biodiesel (B100) quality is critical to ensure a safe and satisfactory engine operation, therefore, during the production process it is important that reaction conversion yield, removal of glycerol, absence of polyunsaturated fatty acids (PUFA), removal of alcohol and absence unreacted glycerides are monitored.

Thermo Fisher Scientific: Automating Biodiesel Quality Testing With Gas Chromatography (GC): Transesterification reaction for biodiesel production.Thermo Fisher Scientific: Automating Biodiesel Quality Testing With Gas Chromatography (GC): Transesterification reaction for biodiesel production.

The American Society for Testing and Materials (ASTM) and the European Standards (EN) have published analytical methods that are widely adopted to characterize impurities in pure biodiesel (B100) by using gas chromatography (GC) coupled to flame ionization detection (FID):

EN 14105 /ASTM D6584

Standard methods  /   Relevance
  • Determination of residual free and total glycerol and mono-, di-, triglyceride content: Unreacted glycerides and free glycerol are critical for engine injector clogging and fouling compounds formation

EN 14103

Standard methods  /   Relevance

Determination of total FAMEs (Fatty Acid Methyl Esters) and linolenic acid methyl ester (C18:3) content: FAME content is a measure the reaction yield and allows accurate calculation of the cetane index of biodiesel

EN 14110

Standard methods  /   Relevance

Determination of residual methanol: Small amount of residual methanol can reduce the flash point of biodiesel, potentially affecting the safe operation of fuel pumps, lifetime of seals and elastomers, and resulting in poor combustion

Biodiesel analyzer: comprehensive quality check with one automated system

Each of the standard methods requires specific GC conditions, calibration set up and sample preparation procedures, typically approached with different GC systems and manual sample handling. Especially the analysis of glycerol and unreacted mono-, di-, triglycerides requires complex and time consuming sample derivatization and complex calibration set up.

To face the high throughput demand of analytical laboratories, a multimethod approach for the analysis of biodiesel samples can be achieved by operating a Thermo Scientific™ TriPlus™ RSH SMART robotic autosampler in Clone Mode configuration, allowing it to serve two Thermo Scientific TRACE™ 1610 GC systems. The TriPlus actss as two independent autosamplers, so that different samples can be automatically injected into two GCs — one dedicated to glycerol analysis due to the high oven temperature that has to be reached — and one dedicated to methanol and FAME determination.

The automation capability and versatility of the TriPlus RSH SMART autosampler is used to execute derivatization protocol as well as calibration setup with internal standard addition, for all the standard methods, followed by injection into the GC systems.

This comprehensive solution for biodiesel analysis is ideal for laboratories performing quality control and production process monitoring, and looking to improve productivity with confident results.

Thermo Fisher Scientific: Automating Biodiesel Quality Testing With Gas Chromatography (GC): TriPlus RSH SMART autosampler configured for automated sample preparation and calibration setup, serving two TRACE 1610 GC systems, one dedicated for EN14105/ASTM D6584 and one dedicated to EN14103/EN14110.Thermo Fisher Scientific: Automating Biodiesel Quality Testing With Gas Chromatography (GC): TriPlus RSH SMART autosampler configured for automated sample preparation and calibration setup, serving two TRACE 1610 GC systems, one dedicated for EN14105/ASTM D6584 and one dedicated to EN14103/EN14110.

Automation for calibration standards, sample derivatization, and internal standard addition, reduces the risk of errors and cross-contaminations, delivering highly precise and reliable analytical results. Automation also allows for unattended operations, saving analysts valuable time as well as limiting analysts’ exposure to the toxic reagents typically used in biodiesel sample derivatization protocols.

Dr. Daniela Cavagnino

Dr. Daniela Cavagnino is global Product Marketing Manager for GC and Autosampler/front-end solutions at Thermo Fisher Scientific. She received her Master's Degree in Chemistry at the University of Milan, Italy. She started her career in gas chromatography spending several years in R&D laboratories working on GC technology innovation. She then conveyed her technical background into product management and marketing management roles with more than 20 years' experience in promoting GC/GC-MS technology and applications in several different market segments. During her career, she has participated as author and co-author in technical publications and actively operated as lecturer at international conferences. 

Resources

Additional resources

  1. Thermo Scientific AN001897 – Biodiesel quality assessment: an automated approach for analysis of free and total glycerol content in biodiesel (B100), according to the EN 14105 and ASTM D6584 methods.
  2. Thermo Scientific AN001898 – Biodiesel quality assessment: characterization of residual methanol in finished biodiesel (B100) by headspace sampling according to EN 14110.
  3. Thermo Scientific AN001899 – Biodiesel quality assessment: determination of esters and linolenic acid methyl ester content in biodiesel (B100) by GC-FID, according to EN 14103
  4. Thermo Scientific EB000396 – Guide to automated sample preparation workflows for GC and GC-MS
Thermo Fisher Scientific
LinkedIn Logo
 

Related content

Analysis of Aroma Components in Apples Using the Smart Aroma Database

Applications
| 2026 | Shimadzu
Instrumentation
GC/MSD, GC/SQ, HeadSpace
Manufacturer
Shimadzu
Industries
Food & Agriculture

Analysis of Acetaldehyde and Limonene in Recycled PET Using an HS-GCMS System (Carrier Gas: H2)

Applications
| 2026 | Shimadzu
Instrumentation
GC/MSD, GC/SQ, HeadSpace
Manufacturer
Shimadzu
Industries
Energy & Chemicals

What Causes GC Capillary Column Performance Degradation, and How Can I Prevent It?

Technical notes
| 2026 | Agilent Technologies
Instrumentation
Consumables, GC columns
Manufacturer
Agilent Technologies
Industries
Other

Aromatic Component Analysis of Gasoline According to ASTM D5580 Using the Brevis GC- 2050 Gas Chromatograph

Applications
| 2025 | Shimadzu
Instrumentation
GC
Manufacturer
Shimadzu
Industries
Energy & Chemicals

Micro GC Analysis of Permanent Gas Impurities in PEM Fuel Cell-Grade Hydrogen

Applications
| 2025 | Agilent Technologies
Instrumentation
GC
Manufacturer
Agilent Technologies
Industries
Energy & Chemicals
 

Related articles

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science
Article | Scientists

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science

Two outstanding early-career researchers at UCT Prague, Filipa Oliveira and Stella Gonsales, received prestigious GAČR JUNIOR STAR grants for innovative research in materials science and sustainable chemistry.
UCT Prague
tag
share
more
Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription
Article | Science and research

Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription

Scientists at IOCB Prague reveal a previously unknown mechanism that initiates gene transcription. Using cryo-EM, they uncover how alarmone molecules enable RNA synthesis under stress.
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
tag
share
more
Webinars LabRulezGCMS Week 07/2026
Article | Webinars

Webinars LabRulezGCMS Week 07/2026

3 webinars: AI in manufacturing, fermentation, functional food, mAb production, metabolite monitoring, process Raman, process analytics
LabRulez
tag
share
more
QuEChERS Combined with Low-Temperature Partitioning and GC–MS as an Analytical Strategy for the Determination of Multiclass Pesticide Residues in Cocoa Beans
Scientific article | Science and research

QuEChERS Combined with Low-Temperature Partitioning and GC–MS as an Analytical Strategy for the Determination of Multiclass Pesticide Residues in Cocoa Beans

This study combines QuEChERS and low-temperature partitioning with GC–MS to determine multiclass pesticide residues in cocoa beans with good sensitivity and recoveries.
LabRulez
tag
share
more
 

Related content

Analysis of Aroma Components in Apples Using the Smart Aroma Database

Applications
| 2026 | Shimadzu
Instrumentation
GC/MSD, GC/SQ, HeadSpace
Manufacturer
Shimadzu
Industries
Food & Agriculture

Analysis of Acetaldehyde and Limonene in Recycled PET Using an HS-GCMS System (Carrier Gas: H2)

Applications
| 2026 | Shimadzu
Instrumentation
GC/MSD, GC/SQ, HeadSpace
Manufacturer
Shimadzu
Industries
Energy & Chemicals

What Causes GC Capillary Column Performance Degradation, and How Can I Prevent It?

Technical notes
| 2026 | Agilent Technologies
Instrumentation
Consumables, GC columns
Manufacturer
Agilent Technologies
Industries
Other

Aromatic Component Analysis of Gasoline According to ASTM D5580 Using the Brevis GC- 2050 Gas Chromatograph

Applications
| 2025 | Shimadzu
Instrumentation
GC
Manufacturer
Shimadzu
Industries
Energy & Chemicals

Micro GC Analysis of Permanent Gas Impurities in PEM Fuel Cell-Grade Hydrogen

Applications
| 2025 | Agilent Technologies
Instrumentation
GC
Manufacturer
Agilent Technologies
Industries
Energy & Chemicals
 

Related articles

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science
Article | Scientists

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science

Two outstanding early-career researchers at UCT Prague, Filipa Oliveira and Stella Gonsales, received prestigious GAČR JUNIOR STAR grants for innovative research in materials science and sustainable chemistry.
UCT Prague
tag
share
more
Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription
Article | Science and research

Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription

Scientists at IOCB Prague reveal a previously unknown mechanism that initiates gene transcription. Using cryo-EM, they uncover how alarmone molecules enable RNA synthesis under stress.
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
tag
share
more
Webinars LabRulezGCMS Week 07/2026
Article | Webinars

Webinars LabRulezGCMS Week 07/2026

3 webinars: AI in manufacturing, fermentation, functional food, mAb production, metabolite monitoring, process Raman, process analytics
LabRulez
tag
share
more
QuEChERS Combined with Low-Temperature Partitioning and GC–MS as an Analytical Strategy for the Determination of Multiclass Pesticide Residues in Cocoa Beans
Scientific article | Science and research

QuEChERS Combined with Low-Temperature Partitioning and GC–MS as an Analytical Strategy for the Determination of Multiclass Pesticide Residues in Cocoa Beans

This study combines QuEChERS and low-temperature partitioning with GC–MS to determine multiclass pesticide residues in cocoa beans with good sensitivity and recoveries.
LabRulez
tag
share
more
 

Related content

Analysis of Aroma Components in Apples Using the Smart Aroma Database

Applications
| 2026 | Shimadzu
Instrumentation
GC/MSD, GC/SQ, HeadSpace
Manufacturer
Shimadzu
Industries
Food & Agriculture

Analysis of Acetaldehyde and Limonene in Recycled PET Using an HS-GCMS System (Carrier Gas: H2)

Applications
| 2026 | Shimadzu
Instrumentation
GC/MSD, GC/SQ, HeadSpace
Manufacturer
Shimadzu
Industries
Energy & Chemicals

What Causes GC Capillary Column Performance Degradation, and How Can I Prevent It?

Technical notes
| 2026 | Agilent Technologies
Instrumentation
Consumables, GC columns
Manufacturer
Agilent Technologies
Industries
Other

Aromatic Component Analysis of Gasoline According to ASTM D5580 Using the Brevis GC- 2050 Gas Chromatograph

Applications
| 2025 | Shimadzu
Instrumentation
GC
Manufacturer
Shimadzu
Industries
Energy & Chemicals

Micro GC Analysis of Permanent Gas Impurities in PEM Fuel Cell-Grade Hydrogen

Applications
| 2025 | Agilent Technologies
Instrumentation
GC
Manufacturer
Agilent Technologies
Industries
Energy & Chemicals
 

Related articles

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science
Article | Scientists

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science

Two outstanding early-career researchers at UCT Prague, Filipa Oliveira and Stella Gonsales, received prestigious GAČR JUNIOR STAR grants for innovative research in materials science and sustainable chemistry.
UCT Prague
tag
share
more
Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription
Article | Science and research

Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription

Scientists at IOCB Prague reveal a previously unknown mechanism that initiates gene transcription. Using cryo-EM, they uncover how alarmone molecules enable RNA synthesis under stress.
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
tag
share
more
Webinars LabRulezGCMS Week 07/2026
Article | Webinars

Webinars LabRulezGCMS Week 07/2026

3 webinars: AI in manufacturing, fermentation, functional food, mAb production, metabolite monitoring, process Raman, process analytics
LabRulez
tag
share
more
QuEChERS Combined with Low-Temperature Partitioning and GC–MS as an Analytical Strategy for the Determination of Multiclass Pesticide Residues in Cocoa Beans
Scientific article | Science and research

QuEChERS Combined with Low-Temperature Partitioning and GC–MS as an Analytical Strategy for the Determination of Multiclass Pesticide Residues in Cocoa Beans

This study combines QuEChERS and low-temperature partitioning with GC–MS to determine multiclass pesticide residues in cocoa beans with good sensitivity and recoveries.
LabRulez
tag
share
more
 

Related content

Analysis of Aroma Components in Apples Using the Smart Aroma Database

Applications
| 2026 | Shimadzu
Instrumentation
GC/MSD, GC/SQ, HeadSpace
Manufacturer
Shimadzu
Industries
Food & Agriculture

Analysis of Acetaldehyde and Limonene in Recycled PET Using an HS-GCMS System (Carrier Gas: H2)

Applications
| 2026 | Shimadzu
Instrumentation
GC/MSD, GC/SQ, HeadSpace
Manufacturer
Shimadzu
Industries
Energy & Chemicals

What Causes GC Capillary Column Performance Degradation, and How Can I Prevent It?

Technical notes
| 2026 | Agilent Technologies
Instrumentation
Consumables, GC columns
Manufacturer
Agilent Technologies
Industries
Other

Aromatic Component Analysis of Gasoline According to ASTM D5580 Using the Brevis GC- 2050 Gas Chromatograph

Applications
| 2025 | Shimadzu
Instrumentation
GC
Manufacturer
Shimadzu
Industries
Energy & Chemicals

Micro GC Analysis of Permanent Gas Impurities in PEM Fuel Cell-Grade Hydrogen

Applications
| 2025 | Agilent Technologies
Instrumentation
GC
Manufacturer
Agilent Technologies
Industries
Energy & Chemicals
 

Related articles

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science
Article | Scientists

JUNIOR STAR Grants at UCT Prague: Two talented women from abroad driving innovation in science

Two outstanding early-career researchers at UCT Prague, Filipa Oliveira and Stella Gonsales, received prestigious GAČR JUNIOR STAR grants for innovative research in materials science and sustainable chemistry.
UCT Prague
tag
share
more
Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription
Article | Science and research

Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription

Scientists at IOCB Prague reveal a previously unknown mechanism that initiates gene transcription. Using cryo-EM, they uncover how alarmone molecules enable RNA synthesis under stress.
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences
tag
share
more
Webinars LabRulezGCMS Week 07/2026
Article | Webinars

Webinars LabRulezGCMS Week 07/2026

3 webinars: AI in manufacturing, fermentation, functional food, mAb production, metabolite monitoring, process Raman, process analytics
LabRulez
tag
share
more
QuEChERS Combined with Low-Temperature Partitioning and GC–MS as an Analytical Strategy for the Determination of Multiclass Pesticide Residues in Cocoa Beans
Scientific article | Science and research

QuEChERS Combined with Low-Temperature Partitioning and GC–MS as an Analytical Strategy for the Determination of Multiclass Pesticide Residues in Cocoa Beans

This study combines QuEChERS and low-temperature partitioning with GC–MS to determine multiclass pesticide residues in cocoa beans with good sensitivity and recoveries.
LabRulez
tag
share
more
Other projects
LCMS
ICPMS
Follow us
More information
WebinarsAbout usContact usTerms of use
LabRulez s.r.o. All rights reserved. Content available under a CC BY-SA 4.0 Attribution-ShareAlike