<p><strong>Gas Chromatography–Mass Spectrometry (GC-MS) is a powerful analytical technique widely used for compound identification, quantification, and structural elucidation. By coupling the separation efficiency of gas chromatography (GC) with the detection and identification capabilities of mass spectrometry (MS), GC-MS enables highly sensitive and specific chemical analysis.&nbsp;</strong></p><p>Understanding how GC-MS works, and its underlying principles, helps scientists optimize analytical workflows, improve accuracy, and troubleshoot effectively whether in environmental testing, drug development, or forensic investigations.</p><h3><strong>What is GC-MS?</strong></h3><p>GC-MS is a hybrid analytical technique that combines the separation power of gas chromatography with the molecular identification capability of mass spectrometry.</p><p>In gas chromatography, a vaporized sample is carried by an inert gas (such as helium or hydrogen) through a capillary column coated with a stationary phase. Each compound interacts differently with the stationary phase depending on its volatility and polarity, causing them to separate as they elute at distinct retention times.</p><p>As compounds exit the column, they enter the mass spectrometer, where they are ionized and fragmented. The mass-to-charge ratio (m/z) of these ions is measured, producing a mass spectrum, a unique molecular fingerprint that enables unambiguous compound identification and quantification.</p><p>This seamless coupling of GC and MS enhances analytical performance by combining chromatographic separation with mass-based detection, allowing even trace-level compounds to be analyzed in complex matrices.</p><h3><strong>Principle of GC-MS</strong></h3><p>The principle of gas chromatography–mass spectrometry involves two fundamental processes:</p><h4><strong>Separation by Gas Chromatography</strong></h4><p>Compounds are vaporized and separated in the <a target="_blank" rel="noopener noreferrer" href="https://gcms.labrulez.com/products?category=7&amp;manufacturerItems=50"><strong>GC column</strong></a> based on their boiling points and interaction strength with the stationary phase. Less volatile compounds or those with stronger affinity for the column elute later, giving each component a unique retention time.</p><h4><strong>Detection by Mass Spectrometry</strong></h4><p>As compounds elute, they are introduced into the MS, where they undergo ionization commonly by electron impact or chemical ionization. Ionization produces charged fragments that are separated in a mass analyzer according to their mass-to-charge (m/z) ratio. The resulting mass spectra serve as fingerprints that enable identification and quantitation through comparison with spectral libraries.</p><p>This dual process allows GC-MS to distinguish structurally similar molecules and perform trace-level analyses in complex mixtures with exceptional accuracy.</p><h3><strong>Step-by-Step Working of GC-MS</strong></h3><ul><li><strong>Sample Introduction:</strong> A liquid or gaseous sample is introduced into the GC, typically with a split or splitless inlet, where it is vaporized immediately.</li><li><strong>Separation in GC Column:</strong> The carrier gas propels the vaporized sample through a long capillary column. Compounds interact with the stationary phase, and those with greater affinity or lower volatility move slower, thus separating from other compounds.</li><li><strong>Transfer to MS:</strong> As separated analytes elute, they are transferred into the mass spectrometer via a heated interface.</li><li><strong>Ionization and Fragmentation:</strong> In the MS, an ion source generates charged ions and fragments. These fragments reflect the compound’s structure.</li><li><strong>Mass Analysis:</strong> The mass analyzer (commonly a quadrupole, but also ion trap or TOF) separates ions by m/z. Each analyte produces a unique mass spectrum.</li><li><strong>Detection and Data Output:</strong> Detectors (e.g., electron multipliers) record signal intensities at each m/z, producing a total ion chromatogram (TIC) and mass spectra, which the data system interprets for compound identification and quantification.</li></ul><h3><strong>Applications of GC-MS</strong></h3><ul><li><strong>Forensic Science:</strong> Used in toxicology, drug identification, and arson investigations, GC-MS provides highly specific detection of trace evidence and controlled substances.</li><li><strong>Pharmaceuticals:</strong> Supports drug purity testing, residual solvent analysis, and metabolite profiling during formulation and quality control.</li><li><strong>Environmental Testing:</strong> Monitors pesticides, volatile organic compounds (VOCs), and pollutants in air, water, and soil samples to ensure regulatory compliance.</li><li><strong>Food Safety:</strong> Detects contaminants, additives, and flavor compounds to maintain product safety and authenticity.</li><li><strong>Clinical and Biomedical Research:</strong> Used in metabolomics and clinical diagnostics to identify volatile biomarkers and metabolites relevant to disease states.</li></ul><h3><strong>Key Benefits of Using GC-MS</strong></h3><ul><li><strong>High Sensitivity and Specificity:</strong> Detects trace-level compounds in complex matrices.</li><li><strong>Comprehensive Structural Information:</strong> Mass spectra provide molecular fingerprints for precise identification.</li><li><strong>Separation and Identification Combined:</strong> Minimizes matrix interference and enhances quantitation accuracy.</li><li><strong>Wide Application Range:</strong> Suitable for environmental, pharmaceutical, food, and forensic testing.</li><li><strong>Extensive Spectral Libraries:</strong> Enables rapid identification of known and unknown compounds.</li></ul><p>A solid understanding of the <a target="_blank" rel="noopener noreferrer" href="https://www.phenomenex.com/resources/knowledge-center/gc-knowledge-center/understanding-the-essential-components-of-gas-chromatography"><strong>components of gas chromatography</strong></a> such as injectors, columns, and detectors helps analysts optimize GC-MS system performance and ensure accurate, reproducible results.</p>

GC-MS: Principles of How it Works?

<p><strong>In late February 2025, a train carrying benzene derailed in Hustopeče nad Bečvou, and within hours, a race was on to save the groundwater and surface water. One of the most toxic industrial substances began seeping into the gravel-sand subsoil. While fieldwork was underway to prevent the spread of contamination, decisions were already being made in the CXI TUL laboratories regarding how to subsequently clean up the contaminated rock environment.</strong></p><p>The accident ranks among the <strong>most serious environmental incidents in the Czech Republic in recent years</strong>. After a tanker train derailed, hundreds of<strong> metric tons of benzene leaked</strong>; due to the highly permeable geological subsoil, it quickly seeped into deeper soil layers and into the groundwater. The combination of the substance’s high toxicity and local conditions complicated both the emergency response and the subsequent remediation. The key was to stop further spread, determine the extent of the contamination, and establish a remediation strategy for the entire site.</p><p>It was at this stage that CXI TUL became involved in the solution. At the request of the renowned remediation company DEKONTA, a.s., a team led by <strong>RNDr. Jan Němeček, Ph.D.</strong>, began testing the feasibility of the<strong> in situ chemical oxidation (ISCO) method</strong>. This technology is designed to<strong> break down benzene directly within the rock matrix</strong>, without the need for extensive excavation of contaminated soil or the pumping out of large volumes of groundwater. The goal was simple: to find a method that would work quickly, safely, and under the actual conditions of the affected site.</p><h4><strong>Benzene Remediation: Technically Simple, Complicated in Practice</strong></h4><p>Benzene is a highly toxic and carcinogenic substance that rapidly penetrates into groundwater in permeable subsoil, where it dissolves and spreads further as the water flows toward surface water bodies. Benzene also binds to rock particles and migrates in the form of vapors into overlying unconsolidated layers.</p><p>Scientists in Liberec therefore tested <i>in situ </i>chemical oxidation (ISCO) technology under laboratory conditions. The goal was to find an oxidant capable of breaking down benzene directly underground into less hazardous substances.</p><p>The tests evaluated two main options:<strong> activated hydrogen peroxide and sodium peroxodisulfate</strong>. Both substances removed up to<strong> 99.99% of the benzene</strong>, but there was a difference in their kinetics and impacts on the natural environment. Activated hydrogen peroxide achieved nearly complete degradation of the contaminant within a single day. Activated sodium peroxodisulfate was slower and also significantly altered the chemistry of the water; it acidified the environment and increased the sulfate content in the water, which poses an additional environmental burden.</p><p>For field applications, the researchers therefore unequivocally recommended <strong>activated hydrogen peroxide</strong>.</p><h4><strong>Dosage Matters</strong></h4><p>It was not just the oxidant’s effectiveness that was key. It was equally important to determine how the chemical reaction would behave in a real geological environment. The team of scientists therefore also analyzed what is known as <strong>soil oxidant consumption (SOD)</strong>. It turned out that a significant portion of the oxidizing agent does not react solely with benzene but is also consumed to a significant extent by the rock environment itself, particularly by natural organic substances present in the fine-grained fraction of the soil.</p><p>An oxidant consumption value was determined specifically for the local composition of the aquifers, which is essential for the correct dosing of chemicals in the field so that the remediation is not only effective but also economically viable and safe for surrounding ecosystems.</p><h4><strong>One Year After the Accident: Research Turns into Real-World Assistance</strong></h4><p>While the public often perceives university science as a distant world of laboratories and grant projects, it is precisely situations like this that demonstrate its practical impact. The results of the work by researchers at CXI TUL did not remain confined to academic studies but directly influenced decisions regarding the technology used to clean up one of the largest environmental accidents in recent years.</p>

Science on the Front Lines: Cleanup of a Benzene Spill

Analytical Challenges and Strategies for Compound Identification Using Gas Chromatography–Ion Mobility Spectrometry

Article

Academy

Environment

Scientific article

Science and research

Everything from the world of analytical chemistry in one place. We connect people in solving their problems. At Labrulez you will find all the necessary information easily, quickly and clearly. Stop searching and start finding.

LabRulez

Phenomenex is a global technology leader committed to developing novel analytical chemistry solutions that solve the separation and purification challenges of researchers in industrial, government and academic laboratories.

Phenomenex

The Institute for Nanomaterials, Advanced Technologies and Innovations of the Technical University of Liberec, also known as CXI TUL, was founded in 2009. Our mission is to support TUL's long-term vision of collaboration with industry and innovation.

CXI TUL

Waters Andrew+ pipetting robot

Andrew+ pipetting robot offers fully automated liquid handling using electronic pipettes and labware holders called Dominos.

<div data-id="7b8f701" data-element_type="widget" data-widget_type="heading.default"><div><h3><strong>Discover lab automation within reach</strong></h3></div></div><div data-id="c1b56fb" data-element_type="widget" data-widget_type="text-editor.default"><div><p><strong>Andrew+ pipetting robot offers fully automated liquid handling using electronic pipettes and labware holders called Dominos. By adding Device+, our ever-expanding portfolio of connected devices and tools for processes such as heating, shaking or labware transportation, Andrew+ evolves into a full walk-away automation solution.</strong></p><p>Creating the connected laboratory, Andrew+ is part of the&nbsp;<a target="_blank" rel="noopener noreferrer" href="https://www.andrewalliance.com/laboratory-software/"><strong>OneLab</strong></a>&nbsp;ecosystem, executing laboratory protocols designed in OneLab.&nbsp; This flexible architecture enables you to effortlessly transition from laborious manual pipetting procedures to error-free, fully-robotized lab workflows – without any knowledge of programming, laboratory robotics or automation engineering.</p><blockquote><p class="cke-user_style-important"><strong>Video: </strong><a target="_blank" rel="noopener noreferrer" href="https://www.youtube.com/watch?v=IGu3YxkkZY0"><strong>Andrew+ Demo</strong></a></p></blockquote><p><img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/Waters_Andrew_pipetting_robot_4_0569f8609e.jpg" alt="Waters Andrew+ pipetting robot" srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_Waters_Andrew_pipetting_robot_4_0569f8609e.jpg 245w," sizes="100vw" width="1440" height="540"></p><h3><strong>Andrew+ Case Studies&nbsp;</strong></h3><blockquote><p class="cke-user_style-important"><a target="_blank" rel="noopener noreferrer" href="https://www.andrewalliance.com/category/case-studies/"><span>See all case studies</span>&nbsp;</a></p></blockquote><div data-id="ee37b9e" data-element_type="widget" data-widget_type="heading.default"><div><h3><strong>Watch Andrew+ in action</strong></h3></div></div><div data-id="b265a33" data-element_type="widget" data-widget_type="text-editor.default"><div><p>In these videos, our biologists explain how Andrew+ enables users to automate commonly used, laborious, liquid handling for PCR Prep and Plasmid DNA Purification, respectively, whilst ensuring superior repeatability and full traceability.</p><blockquote><p class="cke-user_style-important"><strong>Video: </strong><a target="_blank" rel="noopener noreferrer" href="https://www.youtube.com/watch?v=RnxDri3Z7f4"><strong>PCR Prep</strong></a></p><p class="cke-user_style-important"><strong>Video: </strong><a target="_blank" rel="noopener noreferrer" href="https://www.youtube.com/watch?v=oWOkzqF9X9I"><strong>Plasmid DNA Prep</strong></a></p></blockquote><div data-id="fc9cb9e" data-element_type="column"><div><div data-id="cbb1a9b" data-element_type="widget" data-widget_type="heading.default"><div><h3><strong>Intuitive user interface</strong></h3></div></div><div data-id="3799119" data-element_type="widget" data-widget_type="text-editor.default"><div><div><div><div><div><div><p>Reproducibility and full traceability of sample preparation is assured using a highly intuitive browser-based software environment.&nbsp;<a target="_blank" rel="noopener noreferrer" href="https://www.andrewalliance.com/laboratory-software/"><strong>OneLab</strong></a> enables scientists to graphically design their own pipetting protocols in minutes and execute them straight away in any laboratory in the world, even allowing the remote monitoring of ongoing experiments. Use a flexible and secure platform that withstands the rigors of regulatory validation.</p><p><img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/Waters_Onelab_design_2_489d32ac68/Waters-Onelab-design-2_l.webp" alt="Waters-Onelab-design-2_l.webp" width="1027" height="488"></p><div data-id="9199ea6" data-element_type="column"><div><div data-id="6db85f8" data-element_type="widget" data-widget_type="heading.default"><div><h3><strong>Widest pipetting volume range</strong></h3></div></div><div data-id="ae0caea" data-element_type="widget" data-widget_type="text-editor.default"><div><p>Andrew+ pipetting robot uses single and multichannel electronic pipettes, ensuring the best liquid handling performance and maximum flexibility. Smart electronic pipettes are manufactured by Sartorius and based upon their acclaimed Picus pipettes.</p><p>Electronic pipettes are optimized for used with the Andrew+ pipetting robot, allowing greater flexibility in the type of liquid handling experiments that can be run, providing superior experiment reproducibility, pipetting speed and a market leading dynamic range of dispensing volumes for a liquid handing robot –from 0.2 µL up to 10 mL.</p><figure class="image"><img style="aspect-ratio:529/382;" src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/Waters_Andrew_pipetting_robot_f5ca4f825d.jpg" alt="Waters Andrew+ pipetting robot.jpg" srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_Waters_Andrew_pipetting_robot_f5ca4f825d.jpg 216w," sizes="100vw" width="529" height="382"></figure><div data-id="ed235f6" data-element_type="column"><div><div data-id="ef6b933" data-element_type="widget" data-widget_type="heading.default"><div><h3><strong>Andrew+ is compact</strong></h3></div></div><div data-id="7537e2e" data-element_type="widget" data-widget_type="text-editor.default"><div><div><div><div><div><div><p>The liquid handling robot is designed to fit the majority of laboratory benches and biosafety cabinets (BSC). Andrew+, even with 2 full rows of Dominos&nbsp;<i>(</i>allowing to use 7 microplates or 56 falcon tubes or 168 microtubes) occupies a depth of ~55cm/22”, that fits even the smallest hoods. The unique compact size and design of our liquid handler allows it to work at a temperature of 20°C-37°C.&nbsp;</p><figure class="image"><img style="aspect-ratio:836/556;" src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/Waters_Andrew_pipetting_robot_2_fb174b1453.jpg" alt="Waters Andrew+ pipetting robot - 2.jpg" srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_Waters_Andrew_pipetting_robot_2_fb174b1453.jpg 235w," sizes="100vw" width="836" height="556"></figure><div data-id="c9b37a7" data-element_type="widget" data-widget_type="heading.default"><div><h3><strong>Versatile working deck, tools and devices for all your needs</strong></h3></div></div><section data-id="b802f90" data-element_type="section" data-settings="{&quot;jet_parallax_layout_list&quot;:[]}"><div><div data-id="3e689f0" data-element_type="column"><div><div data-id="5dc9372" data-element_type="widget" data-widget_type="text-editor.default"><div><p>The Andrew+ deck layout is quickly adaptable to your experiment materials and are incredibly easy to set with the ever-expanding range of Dominos: a magnetic-based modular solution that enables Andrew+ to use a broad range of consumables.</p></div></div></div></div><div data-id="5626074" data-element_type="column"><div><div data-id="40c6ef1" data-element_type="widget" data-widget_type="text-editor.default"><div><p>In addition to pipetting liquids, the Andrew+ liquid handler can perform a wide range of complex experimental steps such as tube/plate transport or solid-phase extraction using vacuum.<br>Thanks to OneLab, you will benefit to a seamless integration of new capabilities added to your setting.</p><p><img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/Waters_Andrew_pipetting_robot_3_89b87a0d2e.jpg" alt="Waters Andrew+ pipetting robot - 3.jpg" srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_Waters_Andrew_pipetting_robot_3_89b87a0d2e.jpg 245w," sizes="100vw" width="1734" height="598"></p><div data-id="d090821" data-element_type="column"><div><div data-id="f9d733b" data-element_type="widget" data-widget_type="heading.default"><div><h3><strong>Automated Protocols with Andrew+</strong></h3><p>Specifically optimized for Andrew+, various applications and methods guarantee the delivery of better pipetting accuracy and improved reproducibility.</p><blockquote><ul><li><div><a target="_blank" rel="noopener noreferrer" href="https://onelab.andrewalliance.com/library/sars-cov-2-lc-ms-kit-ruo-9lwrvwkA"><span>Automated preparation of SARS-CoV-2 peptides for LC-MS analysis</span></a></div></li><li><div><a target="_blank" rel="noopener noreferrer" href="https://onelab.andrewalliance.com/library/automated-antibody-purification-jlwKQ0aY"><span>Automated Antibody Purification for higher recovery and reproducibility</span></a></div></li><li><div><a target="_blank" rel="noopener noreferrer" href="https://onelab.andrewalliance.com/app/lab/bl6MQP6z/library/standard-curve-generation-KlwRbwR3"><span>Reliable and Robust Sample Prep for Standard Curve Generation</span></a></div></li></ul><p class="cke-user_style-important"><a target="_blank" rel="noopener noreferrer" href="https://onelab.andrewalliance.com/library"><span><strong>More to discover in the Protocol Library</strong></span></a></p></blockquote><h3><strong>Get an extra pair of hands</strong></h3><div data-id="aa4715f" data-element_type="widget" data-widget_type="heading.default"><div><h4><strong>Reproducibility</strong></h4></div></div><div data-id="a1d2f3b" data-element_type="widget" data-widget_type="text-editor.default"><div><div><div data-animationtype="fadeInDown" data-animationduration="0.7" data-animationoffset="top-into-view"><div><p>Laboratory automation eliminates most human errors resulting in more reliable data and improved productivity. Together with complete integration inside OneLab, all experimental data from Andrew+ will be recorded and stored, improving the traceability of experiments and the data analysis.</p><div data-id="fb36639" data-element_type="widget" data-widget_type="heading.default"><div><h4><strong>Productivity</strong></h4></div></div><div data-id="c5f6abd" data-element_type="widget" data-widget_type="text-editor.default"><div><div><div data-animationtype="fadeInDown" data-animationduration="0.7" data-animationoffset="top-into-view"><div><div><div data-animationtype="fadeInDown" data-animationduration="0.7" data-animationoffset="top-into-view"><div><p>Andrew+ combines the flexibility of single channel pipetting (0.2 μL to 10 mL) with the higher throughput of multichannel pipetting. In addition, Andrew+ reduces the need to repeat experiments due to pipetting errors.</p><div data-id="0a035d7" data-element_type="widget" data-widget_type="heading.default"><div><h4><strong>Promoting health</strong></h4></div></div><div data-id="a72e364" data-element_type="widget" data-widget_type="text-editor.default"><div><div><div data-animationtype="fadeInDown" data-animationduration="0.7" data-animationoffset="top-into-view"><div><div id="applications"><div><div><div><div><div id="icon-area" data-animationoffset="top-into-view"><div><div data-animationtype="fadeInDown" data-animationduration="0.7" data-animationoffset="top-into-view"><div><p>Pipetting requires repetitive movements (of up to 500 times per day for the average user) that can lead to musculo-skeletal disorders like repetitive strain injury. Andrew+ helps eliminates physical stress to professionals, and also reduces the risk of exposure to hazardous materials used in certain experimental procedures.</p></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></section></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div>

Products from category Sample preparation automation distributed by Waters Corporation (Europe) - page 1

Related content

Analytical Challenges and Strategies for Compound Identification Using Gas Chromatography–Ion Mobility Spectrometry

Science on the Front Lines: Cleanup of a Benzene Spill

GC-MS: Principles of How it Works?